RNDr. Matej Antol, Ph.D.

Department head, Research e-Infrastructure

correspondence Address:
Šumavská 525/33, 602 00 Brno

phone:	+420 549 49 6787
e‑mail:

social and academic networks:

Basic information

Supervision

Qualifications

Publications

Type

Total number of publications: 33

2024

3D-af-Surfer: Protein structural embeddings of AlphaFold DB

NOVOTNÁ Lucie SLANINÁKOVÁ Terézia PROCHÁZKA David HEJTMÁNEK Lukáš ROŠINEC Adrián OĽHA Jaroslav GREŠOVÁ Katarína DOHNAL Vlastislav ANTOL Matej

Year: 2024, type:
3DZD: Protein structural embeddings of AlphaFold DB v4

NOVOTNÁ Lucie SLANINÁKOVÁ Terézia PROCHÁZKA David HEJTMÁNEK Lukáš ROŠINEC Adrián OĽHA Jaroslav GREŠOVÁ Katarína DOHNAL Vlastislav ANTOL Matej

Year: 2024, type:
3DZD: Protein structural embeddings of ESM Atlas

NOVOTNÁ Lucie SLANINÁKOVÁ Terézia PROCHÁZKA David HEJTMÁNEK Lukáš ROŠINEC Adrián OĽHA Jaroslav GREŠOVÁ Katarína DOHNAL Vlastislav ANTOL Matej

Year: 2024, type:
AlphaFind — discover structure similarity across the proteome in AlphaFold DB

GREŠOVÁ Katarína ŠPRINGEROVÁ Pavlína SLANINÁKOVÁ Terézia PROCHÁZKA David OĽHA Jaroslav ROŠINEC Adrián JÁNOŠOVÁ Miriama ČILLÍK Jakub PORUBSKÁ Jana SVOBODOVÁ Radka DOHNAL Vlastislav ANTOL Matej

Conference abstract

Year: 2024, type: Conference abstract
AlphaFind — discover structure similarity across the proteome in AlphaFold DB

SLANINÁKOVÁ Terézia PROCHÁZKA David OĽHA Jaroslav ROŠINEC Adrián GREŠOVÁ Katarína ČILLÍK Jakub JÁNOŠOVÁ Miriama PORUBSKÁ Jana SVOBODOVÁ Radka DOHNAL Vlastislav ANTOL Matej

Conference abstract

Year: 2024, type: Conference abstract
AlphaFind: Discover structure similarity across the entire known proteome

PROCHÁZKA David SLANINÁKOVÁ Terézia OĽHA Jaroslav ROŠINEC Adrián GREŠOVÁ Katarína JÁNOŠOVÁ Miriama ČILLÍK Jakub PORUBSKÁ Jana SVOBODOVÁ Radka DOHNAL Vlastislav ANTOL Matej

Year: 2024
AlphaFind: Discover structure similarity across the entire known proteome – data and model

NOVOTNÁ Lucie SLANINÁKOVÁ Terézia PROCHÁZKA David HEJTMÁNEK Lukáš GREŠOVÁ Katarína OĽHA Jaroslav DOHNAL Vlastislav ROŠINEC Adrián ANTOL Matej

Year: 2024, type:
AlphaFind: discover structure similarity across the proteome in AlphaFold DB

PROCHÁZKA David SLANINÁKOVÁ Terézia OĽHA Jaroslav ROŠINEC Adrián GREŠOVÁ Katarína JÁNOŠOVÁ Miriama ČILLÍK Jakub PORUBSKÁ Jana SVOBODOVÁ Radka DOHNAL Vlastislav ANTOL Matej

Article in Periodical

Nucleic acids research, year: 2024, volume: 52, edition: July 5, DOI
Beyond Metadata: Leveraging Similarity Search in Molecular Dynamics Data

ROŠINEC Adrián PAVLÍK Tomáš SLANINÁKOVÁ Terézia KŘENEK Aleš ŠPRINGEROVÁ Pavlína ANTOL Matej SVOBODOVÁ Radka

Conference abstract

Year: 2024, type: Conference abstract
Cells, biomaterials, infrastructure; and the value of the data

CAPANDOVÁ Michaela SEDLÁKOVÁ Veronika VORÁČ Zbyněk KOTASOVÁ Hana DUMKOVÁ Jana MORÁŇ Lukáš JAROŠ Josef ANTOL Matej BOHAČIAKOVÁ Dáša HAMPL Aleš

Conference abstract

Year: 2024, type: Conference abstract

Projects

Teaching