CERIT SC

Articles

• A methodology for comparing optimization algorithms for auto-tuning

  FLORIS-JAN Willemsen SCHOONHOVEN Richard FILIPOVIČ Jiří TORRING Jacob O. NIEUWPOORT Rob van WERKHOVEN Ben van

  Article in Periodical

  Future Generation Computer Systems, year: 2024, volume: 109, edition: October 2024, DOI

• Acceleration of Molecular Simulations by Parametric Time-Lagged tSNE Metadynamics

  HRADISKÁ Helena KUREČKA Martin BERÁNEK Jan TEDESCHI Guglielmo VIŠŇOVSKÝ Vladimír KŘENEK Aleš SPIWOK Vojtěch

  Article in Periodical

  The Journal of Physical Chemistry B, year: 2024, DOI

• AlphaFind: discover structure similarity across the proteome in AlphaFold DB

  PROCHÁZKA David SLANINÁKOVÁ Terézia OĽHA Jaroslav ROŠINEC Adrián GREŠOVÁ Katarína JÁNOŠOVÁ Miriama ČILLÍK Jakub PORUBSKÁ Jana SVOBODOVÁ Radka DOHNAL Vlastislav ANTOL Matej

  Article in Periodical

  Nucleic acids research, year: 2024, volume: 52, edition: July 5, DOI

• Analysis of metadynamics simulations by metadynminer.py

  BERANEK Jan KŘENEK Aleš SPIWOK Vojtěch

  Article in Periodical

  Bioinformatics, year: 2024, volume: 40, edition: 10, DOI

• CzeGPT-2 – Training New Model for Czech Generative Text Processing Evaluated with the Summarization Task

  HÁJEK Adam HORÁK Aleš

  Article in Periodical

  IEEE ACCESS, year: 2024, volume: 2024, edition: 12, DOI

• Factors influencing the efficacy of recombinant tissue plasminogen activator: Implications for ischemic stroke treatment

  VÍTEČEK Jan VÍTEČKOVÁ WÜNSCHOVÁ Andrea THALEROVÁ Sandra GULATI Sumeet KUBALA Lukáš CAPANDOVÁ Michaela HAMPL Aleš MIKULÍK Robert

  Article in Periodical

  PLOS ONE, year: 2024, volume: 6, edition: 19, DOI

• Getting your DUCs in a row - standardising the representation of Digital Use Conditions

  JEANSON Francis GIBSON Spencer J ALPER Pinar BERNIER Alexander WOOLLEY J Patrick MIETCHEN Daniel STRUG Andrzej BECKER Regina KAMERLING Pim GONZALEZ Maria del Carmen Sanchez MAH Nancy NOVAKOWSKI Ann WILKINSON Mark D BENHAMED Oussama Mohammed LANDI Annalisa KROG Georg Philip MÜLLER Heimo RIAZ Umar VEAL Colin HOLUB Petr VAN ENCKEVORT Esther BROOKES Anthony J

  Article in Periodical

  SCIENTIFIC DATA, year: 2024, volume: 11, edition: 1, DOI

• High spatial and spectral resolution dataset of hyperspectral look-up tables for 3.5 million traits and structural combinations of Central European temperate broadleaf forests

  HANOUSEK Tomáš SLANINÁKOVÁ Terézia REBOK Tomáš JANOUTOVÁ Růžena

  Article in Periodical

  DATA IN BRIEF, year: 2024, volume: 57, edition: December 2024, DOI

• ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era

  ŠPAČKOVÁ Anna VÁVRA Ondřej RAČEK Tomáš BAZGIER Václav SEHNAL David DAMBORSKÝ Jiří SVOBODOVÁ Radka BEDNÁŘ David BERKA Karel

  Article in Periodical

  Nucleic Acids Research, year: 2024, volume: 52, edition: D1, DOI

• Chemically peculiar stars on the pre-main sequence

  KUEß Lukas PAUNZEN Ernst FALTOVÁ Nikola JADLOVSKÝ Daniel LABAJ Matúš MESARČ Marko MONDAL Prapti PRIŠEGEN Michal RAMEZANI Tahereh SUPÍKOVÁ Johana SVAČINKOVÁ Kateřina VÍTKOVÁ Michaela XIA Caiyun BERNHARD Klaus HÜMMERICH Stefan

  Article in Periodical

  Astronomy & Astrophysics, year: 2024, volume: 687, edition: July 2024, DOI