CAVER 2.1

Beneš,  Petr; Kozlíková,  Barbora; Strnad,  Ondřej; Šustr,  Vilém; Šebestová,  Eva; Pavelka,  Antonín; Brezovský,  Jan; Szabó,  Tibor; Zamborský,  Matúš; Sochor,  Jiří; Damborský,  Jiří; Biedermannová,  Lada

CAVER 2.1

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This publication doesn't include Institute of Computer Science. It includes Faculty of Informatics. Official publication website can be found on muni.cz.

Authors	BENEŠ Petr KOZLÍKOVÁ Barbora STRNAD Ondřej ŠUSTR Vilém CHOVANCOVÁ Eva PAVELKA Antonín BREZOVSKÝ Jan SZABÓ Tibor ZAMBORSKÝ Matúš SOCHOR Jiří DAMBORSKÝ Jiří BIEDERMANNOVÁ Lada
Year of publication	2010
MU Faculty or unit	Faculty of Informatics
Web	http://decibel.fi.muni.cz/caver/
Description	CAVER algorithm enables rapid and fully automated calculation of specific pathways called channels in protein molecules. It enables to compute channels in static molecules as well as in molecular dynamics. CAVER is distributed as standalone plugin for PyMOL and also as a part of CAVER Viewer visualization tool. It enables to display computed channels and to perform various subsequent analyses. CAVER Viewer is available as a standalone software or as a Java Web Start application.
Related projects:	Interactions among the chemicals, environment and biological systems and their consequences on the global, regional and local scales (INCHEMBIOL) New approaches in electrochemical analysis of nucleic acids and oligonucleotides aimed at a ultrasensitive microdetection of DNA and DNA hybridization Center of Biocatalysis and Biotransformation Visualization of protein structures Posílení zapojení studentů Fakulty informatiky do mezinárodní vědecké komunity