Biochemical Space: A Language for Formal Description and Annotation of Complex Biological Processes

• Autoři: TROJÁK Matej; ŠAFRÁNEK David; KLEMENT Matej; DĚD Tadeáš; ČERVENÝ Jan; BRIM Luboš
• Rok publikování: 2015
• Druh: Další prezentace na konferencích
• Fakulta / Pracoviště MU: Fakulta informatiky
• Popis: Biochemical Space (BCS) is a novel framework for practical description of complex biological processes. It is developed as a part of Comprehensive Modelling Platform (CMP) – a web-based platform for modelling and analysis of biological processes. In the context of CMP, Biochemical Space glues together complicated quantitative models with an easy-to- understand, yet formal and compact qualitative description. BCS allows to specify formal and well-annotated reaction networks of chemical entities and elemental reactions onto which the mathematical models are projected. BCS is supported by a Biochemical Space Language (BCSL) that combines state-of-the-art rule-based techniques with meta-data formats devel- oped in well-known annotation databases.

Související projekty

• Získávání parametrů biologických modelů pomocí techniky ověřování modelů
• Rozsáhlé výpočetní systémy: modely, aplikace a verifikace V.
• The national infrastructure C4SYS - Centre for Systems Biology