PDBImages: a command-line tool for automated macromolecular structure visualization

Varování

Publikace nespadá pod Ústav výpočetní techniky, ale pod Přírodovědeckou fakultu. Oficiální stránka publikace je na webu muni.cz.

Autoři	MIDLIK Adam NAIR Sreenath ANYANGO Stephen DESHPANDE Mandar SEHNAL David VARADI Mihaly VELANKAR Sameer
Rok publikování	2023
Druh	Článek v odborném periodiku
Časopis / Zdroj	Bioinformatics
Fakulta / Pracoviště MU	Přírodovědecká fakulta
Citace
www	https://academic.oup.com/bioinformatics/article/39/12/btad744/7470737
Doi	http://dx.doi.org/10.1093/bioinformatics/btad744
Klíčová slova	biomacromolecules; organelle- and cell-sized models; PDBImages; open-source; visualization; databases; software; 3D structure; bioinformatics
Popis	PDBImages is an innovative, open-source Node.js package that harnesses the power of the popular macromolecule structure visualization software Mol*. Designed for use by the scientific community, PDBImages provides a means to generate high-quality images for PDB and AlphaFold DB models. Its unique ability to render and save images directly to files in a browserless mode sets it apart, offering users a streamlined, automated process for macromolecular structure visualization. Here, we detail the implementation of PDBImages, enumerating its diverse image types, and elaborating on its user-friendly setup. This powerful tool opens a new gateway for researchers to visualize, analyse, and share their work, fostering a deeper understanding of bioinformatics.
Související projekty:	Cell*: a web platform for visualization, modelling and dynamics of organelle- and cell-sized structures