Ing. Katarína Grešová, Ph.D.

Department of Machine Learning and Data Processing

e‑mail:

Basic information

Supervision

Qualifications

Publications

Type

Total number of publications: 22

2025

Refining Structure-Based Search in AlphaFold DB: Including confidence metrics into AlphaFind

SLANINÁKOVÁ Terézia MARŠÁLKOVÁ Eva GREŠOVÁ Katarína KŘENEK Aleš OĽHA Jaroslav PAVLÍK Tomáš ŠPRINGEROVÁ Pavlína SEHNAL David ANTOL Matej

Conference abstract

Year: 2025, type: Conference abstract

2024

3D-af-Surfer: Protein structural embeddings of AlphaFold DB

NOVOTNÁ Lucie SLANINÁKOVÁ Terézia PROCHÁZKA David HEJTMÁNEK Lukáš ROŠINEC Adrián OĽHA Jaroslav GREŠOVÁ Katarína DOHNAL Vlastislav ANTOL Matej

Specialized database

Year: 2024, type: Specialized database
3DZD: Protein structural embeddings of AlphaFold DB v4

NOVOTNÁ Lucie SLANINÁKOVÁ Terézia PROCHÁZKA David HEJTMÁNEK Lukáš ROŠINEC Adrián OĽHA Jaroslav GREŠOVÁ Katarína DOHNAL Vlastislav ANTOL Matej

Specialized database

Year: 2024, type: Specialized database
3DZD: Protein structural embeddings of ESM Atlas

NOVOTNÁ Lucie SLANINÁKOVÁ Terézia PROCHÁZKA David HEJTMÁNEK Lukáš ROŠINEC Adrián OĽHA Jaroslav GREŠOVÁ Katarína DOHNAL Vlastislav ANTOL Matej

Research and development projects

Year: 2024, type: Research and development projects
AlphaFind — discover structure similarity across the proteome in AlphaFold DB

GREŠOVÁ Katarína ŠPRINGEROVÁ Pavlína SLANINÁKOVÁ Terézia PROCHÁZKA David OĽHA Jaroslav ROŠINEC Adrián JÁNOŠOVÁ Miriama ČILLÍK Jakub PORUBSKÁ Jana SVOBODOVÁ Radka DOHNAL Vlastislav ANTOL Matej

Conference abstract

Year: 2024, type: Conference abstract
AlphaFind — discover structure similarity across the proteome in AlphaFold DB

SLANINÁKOVÁ Terézia PROCHÁZKA David OĽHA Jaroslav ROŠINEC Adrián GREŠOVÁ Katarína ČILLÍK Jakub JÁNOŠOVÁ Miriama PORUBSKÁ Jana SVOBODOVÁ Radka DOHNAL Vlastislav ANTOL Matej

Conference abstract

Year: 2024, type: Conference abstract
AlphaFind: Discover structure similarity across the entire known proteome

PROCHÁZKA David SLANINÁKOVÁ Terézia OĽHA Jaroslav ROŠINEC Adrián GREŠOVÁ Katarína JÁNOŠOVÁ Miriama ČILLÍK Jakub PORUBSKÁ Jana SVOBODOVÁ Radka DOHNAL Vlastislav ANTOL Matej

Research report

Year: 2024
AlphaFind: Discover structure similarity across the entire known proteome – data and model

NOVOTNÁ Lucie SLANINÁKOVÁ Terézia PROCHÁZKA David HEJTMÁNEK Lukáš GREŠOVÁ Katarína OĽHA Jaroslav DOHNAL Vlastislav ROŠINEC Adrián ANTOL Matej

Specialized database

Year: 2024, type: Specialized database
AlphaFind: discover structure similarity across the proteome in AlphaFold DB

PROCHÁZKA David SLANINÁKOVÁ Terézia OĽHA Jaroslav ROŠINEC Adrián GREŠOVÁ Katarína JÁNOŠOVÁ Miriama ČILLÍK Jakub PORUBSKÁ Jana SVOBODOVÁ Radka DOHNAL Vlastislav ANTOL Matej

Article in Periodical

Nucleic acids research, year: 2024, volume: 52, edition: W1, DOI
Fast, structure-based searching in a large-scale protein data repository

SLANINÁKOVÁ Terézia GREŠOVÁ Katarína PROCHÁZKA David SPIŠAKOVÁ Viktória ROŠINEC Adrián ČILLÍK Jakub ŠPRINGEROVÁ Pavlína KŘENEK Aleš DOHNAL Vlastislav SVOBODOVÁ Radka ANTOL Matej

Conference abstract

Year: 2024, type: Conference abstract

Projects

Teaching