Ing. Katarína Grešová, Ph.D.

2024

• GraSR: Protein structural embeddings of AlphaFold DB

  NOVOTNÁ Lucie SLANINÁKOVÁ Terézia PROCHÁZKA David HEJTMÁNEK Lukáš ROŠINEC Adrián OĽHA Jaroslav GREŠOVÁ Katarína DOHNAL Vlastislav ANTOL Matej

  Research and development projects

  Year: 2024, type: Research and development projects

• LMI-10: Protein structural embeddings of AlphaFold DB

  NOVOTNÁ Lucie SLANINÁKOVÁ Terézia PROCHÁZKA David HEJTMÁNEK Lukáš ROŠINEC Adrián OĽHA Jaroslav GREŠOVÁ Katarína DOHNAL Vlastislav ANTOL Matej

  Research and development projects

  Year: 2024, type: Research and development projects

• LMI-30: Protein structural embeddings of AlphaFold DB

  NOVOTNÁ Lucie SLANINÁKOVÁ Terézia PROCHÁZKA David HEJTMÁNEK Lukáš ROŠINEC Adrián OĽHA Jaroslav GREŠOVÁ Katarína DOHNAL Vlastislav ANTOL Matej

  Research and development projects

  Year: 2024, type: Research and development projects

2023

• Analysis of chimeric reads characterises the diverse targetome of AGO2-mediated regulation

  HEJRET Václav VARADARAJAN Nandan Mysore KLIMENTOVÁ Eva GREŠOVÁ Katarína GIASSA Ilektra-Chara VAŇÁČOVÁ Štěpánka ALEXIOU Panagiotis

  Article in Periodical

  Scientific Reports, year: 2023, volume: 13, edition: 1, DOI

• Genomic benchmarks: a collection of datasets for genomic sequence classification

  GREŠOVÁ Katarína MARTINEK Vlastimil ČECHÁK David ŠIMEČEK Petr ALEXIOU Panagiotis

  Article in Periodical

  BMC Genomic Data, year: 2023, volume: 24, edition: 1, DOI

• RBP-Tar – a searchable database for experimental RBP binding sites

  GREŠOVÁ Katarína RAČEK Tomáš MARTINEK Vlastimil ČECHÁK David SVOBODOVÁ Radka ALEXIOU Panagiotis

  Article in Periodical

  F1000Research, year: 2023, volume: 12, edition: 755, DOI

• Transfer Learning Allows Accurate RBP Target Site Prediction with Limited Sample Sizes

  VACULÍK Ondřej CHALUPOVÁ Eliška GREŠOVÁ Katarína MAJTNER Tomáš ALEXIOU Panagiotis

  Article in Periodical

  Biology, year: 2023, volume: 12, edition: 10, DOI

• Using Attribution Sequence Alignment to Interpret Deep Learning Models for miRNA Binding Site Prediction

  GREŠOVÁ Katarína VACULÍK Ondřej ALEXIOU Panagiotis

  Article in Periodical

  Biology, year: 2023, volume: 12, edition: 3, DOI

2022

• Genomic Benchmarks: A Collection of Datasets for Genomic Sequence Classification

  GREŠOVÁ Katarína ŠIMEČEK Petr MARTINEK Vlastimil ČECHÁK David ALEXIOU Panagiotis

  Conference abstract

  Year: 2022, type: Conference abstract

• miRBind: a Deep Learning method for miRNA binding classification

  KLIMENTOVÁ Eva HEJRET Václav GREŠOVÁ Katarína GIASSA Ilektra-Chara ALEXIOU Panagiotis

  Conference abstract

  Year: 2022, type: Conference abstract