doc. RNDr. Petr Holub, Ph.D.

2023

• Shedding light on the black box of a neural network used to detect prostate cancer in whole slide images by occlusion-based explainability

  GALLO Matej KRAJŇANSKÝ Vojtěch NENUTIL Rudolf HOLUB Petr BRÁZDIL Tomáš

  Article in Periodical

  NEW BIOTECHNOLOGY, year: 2023, volume: 78, edition: December, DOI

• Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness

  DAVID Romain RICHARD Audrey CONNELLAN Claire LAUER Katharina CHIUSANO Maria Luisa GOBLE Carole HOUDE Martin KEMMER Isabel KEPPLER Antje LIEUTAUD Philippe OHMANN Christian PANAGIOTOPOULOU Maria KHAN Sara Raza RYBINA Arina SOILAND-REYES Stian WIT Charlotte WITTNER Rudolf BUONO Rafael Andrade MARSH Sarah Arnaud AUDERGON Pauline BONFILS Dylan JOSE-MARIA Carazo CHARREL Remi COPPENS Frederik FECKE Wolfgang FILIPPONE Claudia ALVAREZ Eva Garcia GUL Sheraz HERMJAKOB Henning HERZOG Katja HOLUB Petr KOZERA Lukasz LISTER Allyson LÓPEZ-CORONADO José MADON Bénédicte MAJCEN Kurt MARTIN William MÜLLER Wolfgang PAPADOPOULOU Elli PRAT Christine M.A. ROMANO Paolo SUSANNA-ASSUNTA Sansone SAUNDERS Gary BLOMBERG Niklas EWBANK Jonathan

  Article in Periodical

  Data Science Journal, year: 2023, DOI

• xOpat: eXplainable Open Pathology Analysis Tool

  HORÁK Jiří FURMANOVÁ Katarína KOZLÍKOVÁ Barbora BRÁZDIL Tomáš HOLUB Petr KAČENGA Martin GALLO Matej NENUTIL Rudolf BYŠKA Jan RUSŇÁK Vít

  Article in Periodical

  COMPUTER GRAPHICS FORUM, year: 2023, volume: 42, edition: 3, DOI

2022

• Automated annotations of epithelial cells and stroma in hematoxylin–eosin-stained whole-slide images using cytokeratin re-staining

  BRÁZDIL Tomáš GALLO Matej NENUTIL Rudolf KUBANDA Andrej TOUFAR Martin HOLUB Petr

  Article in Periodical

  The Journal of Pathology: Clinical Research, year: 2022, volume: 8, edition: 2, DOI

• Lightweight Distributed Provenance Model for Complex Real–world Environments

  WITTNER Rudolf MASCIA Cecilia GALLO Matej FREXIA Francesca MÜLLER Heimo PLASS Markus GEIGER Jörg HOLUB Petr

  Article in Periodical

  Scientific Data, year: 2022, volume: 2022, edition: 9, DOI

• Position paper on management of personal data in environment and health research in Europe

  GOVARTS Eva GILLES Liese BOPP Stephanie HOLUB Petr MATALONGA Leslie VERMEULEN Roel VRIJHEID Martine BELTRAN Sergi HARTLEV Mette JONES Sarah MARTIN Laura Rodriguez STANDAERT Arnout SWERTZ Morris A THEUNIS Jan TRIER Xenia VOGEL Nina VAN ESPEN Koert REMY Sylvie SCHOETERS Greet

  Article in Periodical

  Environment International, year: 2022, volume: 165, DOI

• The Common Provenance Model: Capturing Distributed Provenance in Life Sciences Processes

  FREXIA Francesca MASCIA Cecilia WITTNER Rudolf PLASS Markus MÜLLER Heimo GEIGER Jörg HOLUB Petr

  Conference abstract

  Year: 2022, type: Conference abstract

2021

• BBMRI-ERIC Negotiator: Implementing Efficient Access to Biobanks

  REIHS Robert PROYNOVA Rumyana MAQSOOD Saher ATAIAN Maxmilian LABLANS Martin QUINLAN Philip R. LAWRENCE Emma BOWMAN Erinna VAN ENCKEVORT Esther BUČÍK Dominik František MÜLLER Heimo HOLUB Petr

  Article in Periodical

  Biopreservation and Biobanking, year: 2021, DOI

• Enabling Trustworthy and Traceable Research by Non-Repudiable Opaque Provenance in a Distributed Environment

  WITTNER Rudolf GEIGER Jörg MASCIA Cecilia FREXIA Francesca MULLER Heimo HOLUB Petr

  Conference abstract

  Year: 2021, type: Conference abstract

• GA4GH: International policies and standards for data sharing across genomic research and healthcare

  REHM Heidi PAGE Angela SMITH Lindsay ADAMS Jeremy ALTEROVITZ Gil BABB Lawrence BARKLEY Maxmillian BAUDIS Michael BEAUVAIS Michael BECK Tim BECKMANN Jacques BELTRAN Sergi BERNICK David BERNIER Alexander BONFIELD James BOUGHTWOOD Tiffany BOURQUE Guillaume BOWERS Sarion BROOKES Anthony BRUDNO Michael BRUSH Matthew BUJOLD David BURDETT Tony BUSKE Orion CABILI Moran CAMERON Daniel CARROLL Robert CASAS-SILVA Esmeralda CHAKRAVARTY Debyani CHAUDHARI Bimal CHEN Shu Hui CHERRY Michael CHUNG Justina CLINE Melissa CLISSOLD Hayley COOK-DEEGAN Robert COURTOT Mélanie CUNNINGHAM Fiona CUPAK Miro DAVIES Robert DENISKO Danielle DOERR Megan DOLMAN Lena DOVE Edward DURSI Jonathan DYKE Stephanie EDDY James EILBECK Karen ELLROTT Kyle FAIRLEY Susan FAKHRO Khalid FIRTH Helen FITZSIMONS Michael FIUME Marc FLICEK Paul FORE Ian FREEBERG Mallory FREIMUTH Robert FROMONT Lauren FUERTH Jonathan GAFF Clara GAN Weiniu GHANAIM Elena GLAZER David GREEN Robert GRIFFITH Malachi GRIFFITH Obi GROSSMAN Robert GROZA Tudor AUVIL Jaime Guidry GUIGÓ Roderic GUPTA Dipayan HAENDEL Melissa HAMOSH Ada HANSEN David HART Reece HARTLEY Dean Mitchell HAUSSLER David HENDRICKS-STURRUP Rachele HO Calvin HOBB Ashley HOFFMAN Michael HOFMANN Oliver HOLUB Petr HSU Jacob Shujui HUBAUX Jean-Pierre HUNT Sarah HUSAMI Ammar JACOBSEN Julius JAMUAR Saumya JANES Elizabeth JEANSON Francis JENÉ Aina JOHNS Amber JOLY Yann JONES Steven KANITZ Alexander KATO Kazuto KEANE Thomas KEKESI-LAFRANCE Kristina KELLEHER Jerome KERRY Giselle KHOR Seik-Soon KNOPPERS Bartha KONOPKO Melissa KOSAKI Kenjiro KUBA Martin LAWSON Jonathan LEINONEN Rasko LI Stephanie LIN Michael LINDEN Mikael LIU Xianglin LIYANAGE Isuru Udara LOPEZ Javier LUCASSEN Anneke LUKOWSKI Michael MANN Alice MARSHALL John MATTIONI Michele METKE-JIMENEZ Alejandro MIDDLETON Anna MILNE Richard MOLNÁR-GÁBOR Fruzsina MULDER Nicola MUNOZ-TORRES Monica NAG Rishi NAKAGAWA Hidewaki NASIR Jamal NAVARRO Arcadi NELSON Tristan NIEWIELSKA Ania NISSELLE Amy NIU Jeffrey NYRÖNEN Tommi BRIAN O Connor OESTERLE Sabine OGISHIMA Soichi WANG Vivian Ota PAGLIONE Laura PALUMBO Emilio PARKINSON Helen PHILIPPAKIS Anthony PIZARRO Angel PRLIC Andreas RAMBLA Jordi RENDON Augusto RIDER Renee ROBINSON Peter RODARMER Kurt RODRIGUEZ Laura Lyman RUBIN Alan RUEDA Manuel RUSHTON Gregory RYAN Rosalyn SAUNDERS Gary SCHUILENBURG Helen SCHWEDE Torsten SCOLLEN Serena SENF Alexander SHEFFIELD Nathan SKANTHARAJAH Neerjah SMITH Albert SOFIA Heidi SPALDING Dylan SPURDLE Amanda STARK Zornitza STEIN Lincoln SUEMATSU Makoto TAN Patrick TEDDS Jonathan THOMSON Alastair THOROGOOD Adrian TICKLE Timothy TOKUNAGA Katsushi TÖRNROOS Juha TORRENTS David UPCHURCH Sean VALENCIA Alfonso VALLS GUIMERA Roman VAMATHEVAN Jessica VARMA Susheel VEARS Danya VINER Coby VOISIN Craig WAGNER Alex WALLACE Susan WALSH Brian WILLIAMS Marc WINKLER Eva WOLD Barbara WOOD Grant WOOLLEY Patrick YAMASAKI Chisato YATES Andrew YUNG Christina ZASS Lyndon ZAYTSEVA Ksenia ZHANG Junjun GOODHAND Peter NORTH Kathryn BIRNEY Ewan

  Article in Periodical

  Cell Genomics, year: 2021, volume: 2021, edition: 1, DOI