Project information
Biomolecular centre
- Project Identification
- LC06030
- Project Period
- 3/2006 - 12/2011
- Investor / Pogramme / Project type
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Ministry of Education, Youth and Sports of the CR
- Basic Research Center
- MU Faculty or unit
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Central European Institute of Technology
- prof. RNDr. Vladimír Sklenář, DrSc.
- Keywords
- Cancer drugs, biosensors, lectins, molecular modeling of biomolecules, biomolecular NMR
- Cooperating Organization
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Institute of Biophysics
- Responsible person prof. RNDr. Jiří Šponer, DrSc.
- Responsible person doc. RNDr. Ivan Rychlík, Ph.D.
The main goal of the project is to elevate the structural biology in the Czech Republic from studies of individual biomacromolecules to investigations of their complexes. This goal will be achieved by implementation of up-to-date methodology in selected scientific fields (NMR spectroscopy, computational modeling) and by focusing on problems, which are currently in the centre of interest of contemporary life sciences. Among others, key cell processes such as preservation of genome stability and DNA repair, ribosomal protein synthesis, or information transfer by recognition (lectins) will be studied. Selected research projects will lead eventually to bioanalytical (biosensors) and biomedical (vaccines, chemotherapeutics) outcomes with potential applications in research and development. To reach the outlined goals, active collaboration of participating institutions is inevitable. A number of projects will require also a broad international collaboration.
Results
The main goal of the project is to help to drive structural biology in the Czech Republic from studies on single biomacromolecules to studies on biomacromolecular complexes. To achieve the goal, we will implement recent advances in selected key methods in the field (NMR spectrometry, computer modeling) and also contribute to their development. The research will be oriented not only to the structure of biomacromolecules but will also include studies of structure/function relationship. It will touch suchimportant phenomena of the cell life as keeping genome stability, DNA repair, protein synthesis in the ribosome or information transfer via recognition (lectins). Selected parts of the research will be devoted to bioanalytical (biosensors) or biomedicinal(vaccines, chemotherapeutics) projects capable of providing results with potential applications at the practical level. By solving the above scientific tasks, the team will increase its international competitiveness. At the same time, the project will
Publications
Total number of publications: 284
2007
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Molecular dissection of Rad52 mediator activity
Year: 2007, type: R&D Presentation
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Molecular dynamics simulations of quadruplex DNA.
First international meeting on quadruplex DNA,, year: 2007
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Molecular dynamics simulations of RNA: An in silico single molecule approach
BIOPOLYMERS, year: 2007, volume: 85, edition: 2
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Molecular modeling in hands of protein engineers - the lectin-saccharide interaction study
FEBS Journal 274 (suppl. 1), 32th FEBS Congress "Molecular Machines", year: 2007
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Molecular understanding of DSB repair-Mediator proteins
Year: 2007, type: R&D Presentation
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Mutagenesis of PA-IIL and related affinity changes - structure-functional, computational and thermodynamic study
Year: 2007, type: Conference abstract
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New approaches to structure and function studies of RS20L lectin from Ralstonia solanacearum
14th European Carbohydrate Symposium, EUROCARB 14, year: 2007
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NMR 13C-relaxation Study of Base and Sugar Dynamics in GCAA RNA Hairpin Tetraloop
Journal of Biomolecular Structure and Dynamics, year: 2007, volume: 25, edition: 3
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Novel 13C-detected Experiments for Nucleic Acids
11th Chianti Workshop on Magnetic Resonance, year: 2007
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P-31 Chemical Shift Tensors in RNA and DNA Backbone. A DFT Study of Conformational Dependence and Its Implications for NMR Studies.
Year: 2007, type: Conference abstract